🪴Work

      • 3D Structure of DNA
      • A Bit of Cell Biology
      • Algorithms for DNA Sequencing
      • Approximate Matching - Hamming and Edit Distance and Pigeonhole Principle
      • BED Format
      • Boyer-Moore Matching Algorithm
      • DNA
      • Edit Distance Calculation - Recursive Edit Distance of Prefixes
      • Epigenetics
      • FastA FastQ Format
      • Gene
      • Genetic Mutations
      • Genomics File Formats
      • GFF GTF GFF3 Format
      • Indexing The Genome - Pattern Matching, Kmer, Sorted List and Hash Table
      • Introduction to Genomics
      • motif clustering for coloring
      • Naive Exact Matching
      • Next generation sequencing (NGS) methods
      • NGS Applications - Various Sequencing Types
      • Okay... so, what is protein design?
      • Polymerase Chain Reaction (PCR)
      • Proteins
      • RNA
      • SAM BAM Format
      • Smith-Waterman dynamics programming for calculating edit distance
      • Transposons
      • VCF BCF Format
      • git
      • Libmamba - a (much) faster env solver for conda
      • mac config
      • obsidian config
      • Python Notes
      • quartz website setup
      • vim notes
      • Weekly Work Log

    Work Stuff

    Nov 07, 20241 min read

    Rebuild and add my old writings back, one bit at a time.

    New setup log at quartz website setup.

    Move my old blogs

    • Grey’s Site - proto1
    • NGS notes
      • Intro to genomics
      • Algorithms for DNA Sequencing
      • Genomic file formats & command lines & software
    • Front end course notes
    • ML notes, Karpathy zero to hero
    • Old tech blogs
    • Notes

    Done:

    • Introduction to Genomics
    • Algorithms for DNA Sequencing
    • Genomics File Formats and Software

    Graph View

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    • GitHub